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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11624679_11625262_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11624679 - 11625262
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTCCTTCCAACA
Flanking Amino Acid:
DPKELEDYKLQHGTIMGFPK
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
77.4
0.62
0.8
73.6
30
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
47
-0.2
1.8
61.19
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013478
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014092
11605042 - 11630882
25841