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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11625401_11625506_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11625401 - 11625506
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TTAGTATGAACA
Flanking Amino Acid:
KANAHKVKAKIIAEGANGPT
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
50.1
0
1.8
66.1
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013478
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014092
11605042 - 11630882
25841