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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11627625_11629907_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11627625 - 11629907
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAAATCCTAATT
Flanking Amino Acid:
PTAEFQDRISGASEKDIVHS
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
54.9
0.23
1.7
71.52
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013478
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014092
11605042 - 11630882
25841