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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11629971_11630539_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11629971 - 11630539
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATGTAAGT
Flanking Amino Acid:
LAYTMERSARQIMRTAMKYN
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
86.4
0.82
0.8
84.4
30.5
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
47.2
-0.1
2.4
72
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013478
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014092
11605042 - 11630882
25841