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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11658948_11662005_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11658948 - 11662005
Intron Length:
3058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTGG
5'SS Class:
weak_major
3'SS Sequence:
CCACCACCCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGAAAA
U12 Branch Point Sequence:
AAAACCCCACCA
Flanking Amino Acid:
IVATTGVVKKGSPGPAYPQC
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
62.3
44.7
Major BPS
49.7
-0
1.1
57
36.4
Major PPT
46
-0.2
1.6
46
29.5
Minor 5ss
54.4
0.15
2.1
67.3
43.8
Minor BPS
41.5
-0.6
2
50.4
39.8

Associated Gene:

Gene:
SNCG
Ensembl Gene ID:
ENSAPLG00000013906
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014485
11658792 - 11667309
8518