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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11662134_11663047_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11662134 - 11663047
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTGAAATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TGCTGTTGAAAT
Flanking Amino Acid:
KEGVVQSVTSVAEKTKEQAN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
65
0.34
1
59.7
44.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
47.9
-0
2
66.62
43.9

Associated Gene:

Gene:
SNCG
Ensembl Gene ID:
ENSAPLG00000013906
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014485
11658792 - 11667309
8518