About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11674968_11686638_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11674968 - 11686638
Intron Length:
11671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCCTGACTT
Flanking Amino Acid:
FEAASSQSQNGNWCSFTQSR
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.6
0.51
0.8
71
28.6
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
69.4
0.69
1.7
88.83
36.2

Associated Gene:

Gene:
MMRN2
Ensembl Gene ID:
ENSAPLG00000013958
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036417
11660100 - 11695852
35753
ENSAPLT00000014538
11660100 - 11695852
35753