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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11690724_11691817_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11690724 - 11691817
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTAATTAATT
Flanking Amino Acid:
MVLEVNQSNADLQERLLQQV
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74
0.54
1
69
40.8
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
66.3
0.59
1.7
85
34.8

Associated Gene:

Gene:
MMRN2
Ensembl Gene ID:
ENSAPLG00000013958
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014538
11660100 - 11695852
35753