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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11693726_11695463_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11693726 - 11695463
Intron Length:
1738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTGCTAAAATT
Flanking Amino Acid:
NTVQTELLEKDSSVAFHVGF
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
48.1
-0
2
70.59
41.2

Associated Gene:

Gene:
MMRN2
Ensembl Gene ID:
ENSAPLG00000013958
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036417
11660100 - 11695852
35753
ENSAPLT00000014538
11660100 - 11695852
35753