Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11745099_11782174_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

11745099 - 11782174

Intron Length:

37076

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TACTGTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

TAACGCTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.2

39.6

Major BPS

68.5

0.46

73.3

28.9

Major PPT

0.72

0.9

75.8

37.9

Minor 5ss

-2.5

33.4

41.6

Minor BPS

56.3

0.28

1.9

73.43

42.4

Associated Gene:

Gene:

BMPR1A

Ensembl Gene ID:

ENSAPLG00000013998

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047009

11705432 - 11782195

76764