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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11796446_11798482_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11796446 - 11798482
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTATTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATT
Flanking Amino Acid:
TWHDTCFICAVCHVNLEGHP
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
65.7
40.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
68
42.3
Minor 5ss
44.4
-0.6
3.1
68.6
42
Minor BPS
71.1
0.74
1.5
85.74
34

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000038342
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000027157
11796356 - 11907192
110837
ENSAPLT00000042458
11796356 - 11907192
110837