Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11798599 - 11800030

Intron Length:

1432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TTGTTCTAAATT

Flanking Amino Acid:

MEDGEPYCEKDYIALFSTKC

Intron Amino Acid Position:

700

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

67.5

39.2

Major BPS

0.82

0.8

24.9

Major PPT

81.1

0.7

0.9

73.5

41.9

Minor 5ss

36.2

-1.6

3.2

46.5

48.8

Minor BPS

68.1

0.65

1.6

82.85

39.2

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11798599_11800030_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: