Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11800152 - 11802829

Intron Length:

2678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTGCAT

U12 Branch Point Sequence:

GTTTGTTTTACA

Flanking Amino Acid:

CARCHTKIMGEVMHALRQTW

Intron Amino Acid Position:

660

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

68.8

43.8

Major BPS

0.03

1.5

63.1

44.4

Major PPT

0.81

0.8

79.9

37.7

Minor 5ss

38.3

-1.3

2.8

40.5

45.5

Minor BPS

55.3

0.16

2.1

71.79

40.2

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11800152_11802829_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: