Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11804520 - 11810365

Intron Length:

5846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

ATGCTTAAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GCATGCTTAAAA

Flanking Amino Acid:

ASIKPSVYQPAPAPVHSYTP

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.7

37.2

Major BPS

73.1

0.58

79.6

29.1

Major PPT

61.2

0.25

1.1

56.3

Minor 5ss

31.6

-2.1

3.1

45.7

Minor BPS

54.2

0.13

1.9

62.34

43.4

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11804520_11810365_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: