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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11810494_11813248_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11810494 - 11813248
Intron Length:
2755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CATACCTTCATT
Flanking Amino Acid:
STSISYQSKKRNTTQSYTPM
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.7
0.69
0.8
78.4
35.6
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
58.6
0.35
1.8
73.67
43.4

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027858
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000042458
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000038342
11796356 - 11907192
110837