Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11813297_11823416_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11813297 - 11823416

Intron Length:

10120

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACACTGT

5'SS Class:

major

3'SS Sequence:

TGTCTCATTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTTTTTCAAAT

Flanking Amino Acid:

KVPLTSSSNRSFNRHSSTSI

Intron Amino Acid Position:

333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

63.2

43.9

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

77.2

0.61

0.8

74.8

34.8

Minor 5ss

43.9

-0.7

3.3

65.1

46.1

Minor BPS

66.1

0.58

1.6

85.04

35.1

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043406

11796356 - 11907192

110837