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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11813297_11825311_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11813297 - 11825311
Intron Length:
12015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
KENVAAASENSFNRHSSTSI
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.2
0.61
0.8
74.8
34.8
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042458
11796356 - 11907192
110837