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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11818112_11819694_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11818112 - 11819694
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCTT
5'SS Class:
major
3'SS Sequence:
GTGTCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTACATACTT
Flanking Amino Acid:
VQESFSSSFQRVLAAPSSLS
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.2
73.4
43.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
42.2
-0.9
3.5
64.9
46.4
Minor BPS
49
0.01
2
73.72
43.3

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837