About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11818112_11823416_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11818112 - 11823416
Intron Length:
5305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACTGT
5'SS Class:
major
3'SS Sequence:
GTGTCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTACATACTT
Flanking Amino Acid:
KVPLTSSSNRRVLAAPSSLS
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.2
43.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
43.9
-0.7
3.3
65.1
46.1
Minor BPS
49
0.01
2
73.72
43.3

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024048
11796356 - 11907192
110837