About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11818112_11825311_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11818112 - 11825311
Intron Length:
7200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTACATACTT
Flanking Amino Acid:
KENVAAASENRVLAAPSSLS
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
49
0.01
2
73.72
43.3

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038342
11796356 - 11907192
110837