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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11819866_11823416_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11819866 - 11823416
Intron Length:
3551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACTGT
5'SS Class:
major
3'SS Sequence:
CAACTCTAATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
KVPLTSSSNRSIPVEHAPVS
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.2
43.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
57.2
0.16
1
56.3
38.5
Minor 5ss
43.9
-0.7
3.3
65.1
46.1
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027157
11796356 - 11907192
110837
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837