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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11823624_11825311_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11823624 - 11825311
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTTTGTTACCC
Flanking Amino Acid:
KENVAAASENRPSATTHAPQ
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.5
0.6
0.9
69.3
40.9
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
50.8
0.01
2.3
69.02
43.1

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837
ENSAPLT00000027157
11796356 - 11907192
110837