Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11825348 - 11840163

Intron Length:

14816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTTGTTTTATTC

Flanking Amino Acid:

DPDEEALRRSRDKENVAAAS

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

75.1

35.1

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

80.1

0.68

0.7

74.6

27.4

Minor 5ss

32.3

-2

3.1

41.7

Minor BPS

56.8

0.19

1.6

68.82

37.9

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11825348_11840163_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: