Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11840201 - 11841153

Intron Length:

953

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

TTTTTATCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTCTAACT

Flanking Amino Acid:

ILAQMTGTEYMQDPDEEALR

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

68.2

38.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

90.4

0.91

0.7

85.8

27.4

Minor 5ss

35.7

-1.6

2.9

46.8

42.6

Minor BPS

66.3

0.59

1.7

83.74

37.5

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11840201_11841153_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: