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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11841324_11846703_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11841324 - 11846703
Intron Length:
5380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAATT
Flanking Amino Acid:
QAQAQGGEFAGTLPIKDPHV
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.3
0.61
0.9
70.5
38.9
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
67.6
0.63
1.4
78.66
37.9

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837
ENSAPLT00000027157
11796356 - 11907192
110837