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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11841324_11855190_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11841324 - 11855190
Intron Length:
13867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTGAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAATT
Flanking Amino Acid:
RRASEGGLPRGTLPIKDPHV
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.3
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.3
0.61
0.9
70.5
38.9
Minor 5ss
34.2
-1.8
3
36.5
40.9
Minor BPS
67.6
0.63
1.4
78.66
37.9

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000038342
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000042458
11796356 - 11907192
110837