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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11846908_11850551_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11846908 - 11850551
Intron Length:
3644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TTGCATAACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTTGCATAACC
Flanking Amino Acid:
HQKVITNTTSNTEFTERFNP
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
80.2
32.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
64.1
0.32
1
55.6
43.4
Minor 5ss
38.4
-1.3
2.7
48.1
34
Minor BPS
60
0.29
2.1
75.32
41.4

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027157
11796356 - 11907192
110837
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837