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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11850575_11863433_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11850575 - 11863433
Intron Length:
12859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTTGATG
Flanking Amino Acid:
SPRAVIPHQKVITNTTSNTE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.8
0.8
0.6
84.8
22.8
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
63.1
0.27
1.3
64.84
38.1

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027157
11796356 - 11907192
110837
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837