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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11855598_11863433_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11855598 - 11863433
Intron Length:
7836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
TTTGCTACTACA
Flanking Amino Acid:
SPRAVIPHQKEPAWEINDNR
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
50.1
0
1.4
63
43.2
Major PPT
80.4
0.68
0.9
73.9
35.5
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
45
-0.4
2.1
64.41
41.8

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027858
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000042458
11796356 - 11907192
110837
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000038342
11796356 - 11907192
110837