Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11863510 - 11877457

Intron Length:

13948

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGATCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATC

Flanking Amino Acid:

ANYNLSLTLQKSKRPVPVST

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.8

33.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

78.7

0.65

0.9

70.4

40.3

Minor 5ss

41.3

-1

2.8

49.5

41.2

Minor BPS

74.1

0.74

80.38

27.7

Associated Gene:

Gene:

LDB3

Ensembl Gene ID:

ENSAPLG00000014462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024048

11796356 - 11907192

110837

ENSAPLT00000038342

11796356 - 11907192

110837

ENSAPLT00000043406

11796356 - 11907192

110837

ENSAPLT00000023825

11796356 - 11907192

110837

ENSAPLT00000027858

11796356 - 11907192

110837

ENSAPLT00000042458

11796356 - 11907192

110837

ENSAPLT00000015123

11796356 - 11907192

110837

ENSAPLT00000027157

11796356 - 11907192

110837

ENSAPLT00000026247

11796356 - 11907192

110837

ENSAPLT00000038678

11796356 - 11907192

110837

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11863510_11877457_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: