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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11877610_11907069_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11877610 - 11907069
Intron Length:
29460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTCTCCCACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTTCTCCCACA
Flanking Amino Acid:
DFNMPLTISRITPGSKAAQS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
70.3
0.46
0.8
65.8
29.2
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
45.9
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038678
11796356 - 11907192
110837
ENSAPLT00000038342
11796356 - 11907192
110837
ENSAPLT00000024048
11796356 - 11907192
110837
ENSAPLT00000043406
11796356 - 11907192
110837
ENSAPLT00000042458
11796356 - 11907192
110837