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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11896700_11907069_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11896700 - 11907069
Intron Length:
10370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
ATCCCTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATCCCTTGAAC
Flanking Amino Acid:
GLQHALDNLQSAVQAAAIRS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.7
0.35
1
61.5
38.2
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
67.7
0.54
1.4
73.94
36.2

Associated Gene:

Gene:
LDB3
Ensembl Gene ID:
ENSAPLG00000014462
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027157
11796356 - 11907192
110837
ENSAPLT00000026247
11796356 - 11907192
110837
ENSAPLT00000023825
11796356 - 11907192
110837
ENSAPLT00000015123
11796356 - 11907192
110837
ENSAPLT00000027858
11796356 - 11907192
110837