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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11964670_11971811_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11964670 - 11971811
Intron Length:
7142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
GTCATGGTAGCT
Flanking Amino Acid:
KGSSAKLVAAETFAGKAVVL
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
73.8
0.54
0.7
65
30.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
37.5
-0.8
2.5
56.45
46

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000034107
11962683 - 12029582
66900