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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11964670_11983034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11964670 - 11983034
Intron Length:
18365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGCTCATAAAT
Flanking Amino Acid:
KGSSAKLVAADKMQNLNEDN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
55.7
0.26
1.7
75.6
40.5

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158