About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11984085_11991136_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11984085 - 11991136
Intron Length:
7052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
CTTTCAGTAAGG
Flanking Amino Acid:
SQDSQLNTNAELLEFSEDAS
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
45.7
-0.4
2.5
59.99
47.6

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158