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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12005337_12008388_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12005337 - 12008388
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
AGCAACTTACCT
Flanking Amino Acid:
PPVLKTPSVPLYTVVQHVKH
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
48.9
-0
1.9
65.06
44.8

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900