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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12008526_12010030_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12008526 - 12010030
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATTCAGAATT
Flanking Amino Acid:
SNQPLNTRCLSVISLATKCA
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
52.7
0.16
1.7
71.96
38.5

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158
ENSAPLT00000034107
11962683 - 12029582
66900