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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12010143_12015349_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12010143 - 12015349
Intron Length:
5207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCAACCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CCTCTCCCAACC
Flanking Amino Acid:
KTLDDSQHHQNLSLCTAALM
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
53.3
0.08
1
49.6
31.9
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
46.3
-0.3
1.9
56.28
42.1

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158