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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12015578_12020427_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12015578 - 12020427
Intron Length:
4850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
CAAACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
ACTTCACTAACT
Flanking Amino Acid:
NKHLDLENITTGHLAMETLL
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
78.2
37.9
Major BPS
68.7
0.46
1
71.3
34
Major PPT
70.7
0.47
1
66
40.2
Minor 5ss
35.3
-1.7
3.2
51.2
45.5
Minor BPS
60.3
0.4
2
80.68
40.6

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039715
11961107 - 12029264
68158
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582