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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12020540_12021071_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12020540 - 12021071
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATCTTATTGACA
Flanking Amino Acid:
LGGLDHIVDKVKECVDHLSS
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
87.7
0.85
0.8
88.9
28.2
Minor 5ss
45
-0.5
2.6
57.3
47.4
Minor BPS
59.6
0.29
1.6
69.23
36.8

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158