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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12022741_12023921_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12022741 - 12023921
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
GTCCAGGTAATT
Flanking Amino Acid:
KDSQLIVSSAKALQHCEELI
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
39.5
-0.7
2.5
58.74
44.5

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039715
11961107 - 12029264
68158
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582