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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12026797_12027885_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12026797 - 12027885
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATACAAT
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
EDDEELDLNKALQHAGKHME
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
56.4
0.16
1.3
65.1
38.1
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000032718
11962683 - 12029264
66582
ENSAPLT00000015382
11962683 - 12029582
66900
ENSAPLT00000044936
11962683 - 12029264
66582
ENSAPLT00000039715
11961107 - 12029264
68158