About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12029112_12029516_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12029112 - 12029516
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTATATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATAT
Flanking Amino Acid:
KKFLSFMNLTCAVGTTGQKS
Intron Amino Acid Position:
1213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
87
0.83
0.8
85
35
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
62.9
0.48
1.7
82.54
38.3

Associated Gene:

Gene:
WAPL
Ensembl Gene ID:
ENSAPLG00000014722
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034107
11962683 - 12029582
66900
ENSAPLT00000015382
11962683 - 12029582
66900