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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12086567_12086896_R

Intron Information:

Intron Rank:
139287
Intron Class:
major
Intron Phase:
Intron Coordinates:
12086567 - 12086896
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
82.3
28
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
59.8
0.39
1.7
79.06
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040351
12086020 - 12087350
1331