About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12258192_12262391_R

Intron Information:

Intron Rank:
150166
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12258192 - 12262391
Intron Length:
4200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCTGTCTG
5'SS Class:
major
3'SS Sequence:
GAGTGACTCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TCTGCTGTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.3
59
45.6
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
49.1
-0
1.1
42.2
42.3
Minor 5ss
41
-1
2.8
50.6
39.9
Minor BPS
47.8
-0
2.3
70.57
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028381
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018190
12257219 - 12262602
5384