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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12284548_12385189_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12284548 - 12385189
Intron Length:
100642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
CCTGCTTCAACT
Flanking Amino Acid:
MILIACAACDLMTLGIL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
92
0.94
0.6
85.2
29.6
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
57.4
0.31
1.7
71.32
46.1

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944