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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12300_14052_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12300 - 14052
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAGAC
5'SS Class:
major
3'SS Sequence:
CCCCTCGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAG
U12 Branch Point Sequence:
CAGGCCTCAGCC
Flanking Amino Acid:
EIPEHSDITQVARPGTPYFY
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
64.9
33.1
Major BPS
46.6
-0.2
1.4
46.4
38.9
Major PPT
66.8
0.38
0.8
60.3
29.5
Minor 5ss
38.5
-1.3
3.4
49.9
41.1
Minor BPS
45.9
-0.3
1.9
51.59
45.3

Associated Gene:

Gene:
CWF19L1
Ensembl Gene ID:
ENSAPLG00000011370
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011862
1176 - 14383
13208
ENSAPLT00000027241
21 - 14383
14363
Gene:
CHUK
Ensembl Gene ID:
ENSAPLG00000011503
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039931
12183 - 46227
34045
ENSAPLT00000012207
12183 - 45972
33790