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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_123233_126143_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
123233 - 126143
Intron Length:
2911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGAAGAGCGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GATACATGAAGA
Flanking Amino Acid:
FRFGRPKKVKRSHKCVLTDV
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
45
-0.2
1.1
34.7
39.2
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
45.6
-0.3
2
56.93
41.2

Associated Gene:

Gene:
ZNF511
Ensembl Gene ID:
ENSAPLG00000014183
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014782
119338 - 126252
6915