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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12566570_12579917_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12566570 - 12579917
Intron Length:
13348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACTT
Flanking Amino Acid:
KDSHWVYVNEKPIETILVLL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.7
0.62
0.9
77.9
35.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
64.2
0.52
1.5
79.54
37.3

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944