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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_12579972_12580212_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12579972 - 12580212
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TCTCCATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAA
Flanking Amino Acid:
LLCEELPPQYEITDNEILEL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
85
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.2
0.63
0.8
72.1
31.3
Minor 5ss
40.5
-1.1
2.8
58
39.1
Minor BPS
66.6
0.52
1.3
71.49
33.9

Associated Gene:

Gene:
GRID1
Ensembl Gene ID:
ENSAPLG00000014832
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030396
12284526 - 12689469
404944